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Indica Labs halo software platform
Halo Software Platform, supplied by Indica Labs, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/halo+software+platform/halo+platform/bio_rxiv__64898__2026__05__09__721157-244-13-17
Average 86 stars, based on 1 article reviews
halo software platform - by Bioz Stars, 2026-11
86/100 stars

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Related Articles

Staining:

Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer.
Article Snippet: Analysis of tissue microarrays CRC and adjacent paracancerous tissues from the Cancer Hospital of the Chinese Academy of Medical Sciences (Protocol No. KY2023166) were processed into tissue microarrays and immunohistochemically stained with antibodies against ACADS (#TA800429S, Thermo Fisher Scientific), DNMT1 (#GB11328, Servicebio), and HSP60 (#GB15243, Servicebio). .. The staining results were analyzed via the HALO software platform (Indica Labs, USA) to quantify key parameters, including positive cell counts, positive areas, and colocalization. ..

Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer
Article Snippet: CRC and adjacent paracancerous tissues from the Cancer Hospital of the Chinese Academy of Medical Sciences (Protocol No. KY2023166) were processed into tissue microarrays and immunohistochemically stained with antibodies against ACADS (#TA800429S, Thermo Fisher Scientific), DNMT1 (#GB11328, Servicebio), and HSP60 (#GB15243, Servicebio). .. The staining results were analyzed via the HALO software platform (Indica Labs, USA) to quantify key parameters, including positive cell counts, positive areas, and colocalization. ..

Software:

Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer.
Article Snippet: Analysis of tissue microarrays CRC and adjacent paracancerous tissues from the Cancer Hospital of the Chinese Academy of Medical Sciences (Protocol No. KY2023166) were processed into tissue microarrays and immunohistochemically stained with antibodies against ACADS (#TA800429S, Thermo Fisher Scientific), DNMT1 (#GB11328, Servicebio), and HSP60 (#GB15243, Servicebio). .. The staining results were analyzed via the HALO software platform (Indica Labs, USA) to quantify key parameters, including positive cell counts, positive areas, and colocalization. ..

Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer
Article Snippet: .. In addition, the positive cell density of different immune cells and the percentage of colocalized positive cells within tumors were analyzed via the HALO software platform (Indica Labs, USA). .. The human CRC samples and subcutaneous tumors from the mice were minced into 1 mm3 pieces and then digested in 20 mL of RPMI-1640 medium or DMEM supplemented with 1% FBS, 1 mg/mL collagenase IV (#C5138, Sigma), 0.1 mg/mL hyaluronidase (#BS171-1 g, Biosharp Life Science), or 0.1 mg/mL DNase I (#10104159001, Merck Millipore) at 37 °C for 45 min. For adipose tissue processing, epididymal fat pads were harvested, minced, and digested in 10 mL of DMEM containing 1% FBS and 1 mg/mL collagenase IV (#C5138, Sigma) at 37 °C for 45 min.

Article Title: Transcriptomic Analysis of the Human Habenula in Schizophrenia.
Article Snippet: Ege A. Yalcinbas, Ph.D., Bukola Ajanaku, B.A., Erik D. Nelson, Ph.D., Renee Garcia-Flores, B.S., Nicholas J. Eagles, B.S., Kelsey D. Montgomery, B.S., Joshua M. Stolz, M.S., Joshua Wu, B.A., Heena R. Divecha, M.S., Atharv Chandra, B.S., Rahul A. Bharadwaj, Ph.D., Svitlana V. Bach, Ph.D., Anandita Rajpurohit, B.A., Ran Tao, Ph.D., Geo Pertea, M.D., Joo-Heon Shin, Ph.D., Joel E. Kleinman, Ph.D., Thomas M. Hyde, Ph.D., Daniel R. Weinberger, M.D., Louise A. Huuki-Myers, M.S., Leonardo Collado-Torres, Ph.D., Kristen R. Maynard, Ph.D.


Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer.
Article Snippet: .. In addition, the positive cell density of different immune cells and the percentage of colocalized positive cells within tumors were analyzed via the HALO software platform (Indica Labs, USA). .. Fluorescence-activated cell sorting (FACS) of human CRC, mouse tumor, and adipose tissues The human CRC samples and subcutaneous tumors from the mice were minced into 1mm3 pieces and then digested in 20mL of RPMI-1640 medium or DMEM supplemented with 1% FBS, 1 mg/ mL collagenase IV (#C5138, Sigma), 0.1 mg/mL hyaluronidase (#BS171-1 g, Biosharp Life Science), or 0.1 mg/mL DNase I (#10104159001, Merck Millipore) at 37 °C for 45 min. For adipose tissue processing, epididymal fat pads were harvested, minced, and digested in 10 mL of DMEM containing 1% FBS and 1mg/mL collagenase IV (#C5138, Sigma) at 37 °C for 45 min.

Article Title: Short-chain acyl-CoA dehydrogenase initiates mtDNA demethylation and leakage to fuel antitumor immunity in colorectal cancer
Article Snippet: CRC and adjacent paracancerous tissues from the Cancer Hospital of the Chinese Academy of Medical Sciences (Protocol No. KY2023166) were processed into tissue microarrays and immunohistochemically stained with antibodies against ACADS (#TA800429S, Thermo Fisher Scientific), DNMT1 (#GB11328, Servicebio), and HSP60 (#GB15243, Servicebio). .. The staining results were analyzed via the HALO software platform (Indica Labs, USA) to quantify key parameters, including positive cell counts, positive areas, and colocalization. ..

Article Title: Genomic, Clinical, and Spatial Predictors of Durable Response to BRAF/MEK Inhibition in BRAF -Mutant Melanoma
Article Snippet: Stained slides were scanned at 20× magnification using an Aperio AT2 Leica digital whole-slide scanner. .. Digital image analysis was performed using the multiplex IHC module (v1.2) within the HALO software platform (v2.2; Indica Labs). ..

other:

Article Title: Methods and compositions for treating androgen receptor deficient, androgen receptor low, and castration-resistant prostate cancers
Article Snippet: Cells were washed and analyzed using an LSR Fortessa flow cytometer (BD Biosciences).

Imaging:

Article Title: Transcriptomic Analysis of the Human Habenula in Schizophrenia.
Article Snippet: Ege A. Yalcinbas, Ph.D., Bukola Ajanaku, B.A., Erik D. Nelson, Ph.D., Renee Garcia-Flores, B.S., Nicholas J. Eagles, B.S., Kelsey D. Montgomery, B.S., Joshua M. Stolz, M.S., Joshua Wu, B.A., Heena R. Divecha, M.S., Atharv Chandra, B.S., Rahul A. Bharadwaj, Ph.D., Svitlana V. Bach, Ph.D., Anandita Rajpurohit, B.A., Ran Tao, Ph.D., Geo Pertea, M.D., Joo-Heon Shin, Ph.D., Joel E. Kleinman, Ph.D., Thomas M. Hyde, Ph.D., Daniel R. Weinberger, M.D., Louise A. Huuki-Myers, M.S., Leonardo Collado-Torres, Ph.D., Kristen R. Maynard, Ph.D.

Multiplex Assay:

Article Title: Genomic, Clinical, and Spatial Predictors of Durable Response to BRAF/MEK Inhibition in BRAF -Mutant Melanoma
Article Snippet: Stained slides were scanned at 20× magnification using an Aperio AT2 Leica digital whole-slide scanner. .. Digital image analysis was performed using the multiplex IHC module (v1.2) within the HALO software platform (v2.2; Indica Labs). ..

Immunohistochemistry:

Article Title: Genomic, Clinical, and Spatial Predictors of Durable Response to BRAF/MEK Inhibition in BRAF -Mutant Melanoma
Article Snippet: Stained slides were scanned at 20× magnification using an Aperio AT2 Leica digital whole-slide scanner. .. Digital image analysis was performed using the multiplex IHC module (v1.2) within the HALO software platform (v2.2; Indica Labs). ..



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